ROBUST STATE–SPACE MODELING OF ANIMAL MOVEMENT DATA
Abstract
Remotely sensed tracking data collected on animal movement is vastly underutilized due to a lack of statistical tools for appropriate analysis. Features of such data that make analysis particularly challenging include the presence of estimation errors that are non‐Gaussian and vary in time, observations that occur irregularly in time, and complexity in the underlying behavioral processes. We develop a state–space framework that simultaneously deals with these features and demonstrate our method by analyzing three seal pathway data sets. We show how known information regarding error distributions can be used to improve inference of the underlying process(es) and demonstrate that our framework provides a powerful and flexible method for fitting different behavioral models to tracking data.
Citing Literature
Number of times cited according to CrossRef: 384
- Sergi Pérez‐Jorge, Marta Tobeña, Rui Prieto, Frederic Vandeperre, Beatriz Calmettes, Patrick Lehodey, Mónica A. Silva, Environmental drivers of large‐scale movements of baleen whales in the mid‐North Atlantic Ocean, Diversity and Distributions, 10.1111/ddi.13038, 26, 6, (683-698), (2020).
- Leonie Enners, Nils Guse, Philipp Schwemmer, Anna L.J. Chagas, Christian C. Voigt, Stefan Garthe, Foraging ecology and diet of Eurasian spoonbills (Platalea leucorodia) in the German Wadden Sea, Estuarine, Coastal and Shelf Science, 10.1016/j.ecss.2019.106539, 233, (106539), (2020).
- Yann Planque, Mathilde Huon, Florence Caurant, David Pinaud, Cécile Vincent, Comparing the horizontal and vertical approaches used to identify foraging areas of two diving marine predators, Marine Biology, 10.1007/s00227-019-3636-8, 167, 2, (2020).
- Emily Chou, Francine Kershaw, Sara M. Maxwell, Tim Collins, Samantha Strindberg, Howard C. Rosenbaum, Distribution of breeding humpback whale habitats and overlap with cumulative anthropogenic impacts in the Eastern Tropical Atlantic, Diversity and Distributions, 10.1111/ddi.13033, 26, 5, (549-564), (2020).
- S Furukawa, A Kozuka, T Tsuji, H Kubota, Horizontal and vertical movement of yellowtails Seriola quinqueradiata during summer to early winter recorded by archival tags in the northeastern Japan Sea, Marine Ecology Progress Series, 10.3354/meps13226, 636, (139-156), (2020).
- Yan Ropert-Coudert, Anton P. Van de Putte, Ryan R. Reisinger, Horst Bornemann, Jean-Benoît Charrassin, Daniel P. Costa, Bruno Danis, Luis A. Hückstädt, Ian D. Jonsen, Mary-Anne Lea, David Thompson, Leigh G. Torres, Philip N. Trathan, Simon Wotherspoon, David G. Ainley, Rachael Alderman, Virginia Andrews-Goff, Ben Arthur, Grant Ballard, John Bengtson, Marthán N. Bester, Arnoldus Schytte Blix, Lars Boehme, Charles-André Bost, Peter Boveng, Jaimie Cleeland, Rochelle Constantine, Robert J. M. Crawford, Luciano Dalla Rosa, P. J. Nico de Bruyn, Karine Delord, Sébastien Descamps, Mike Double, Louise Emmerson, Mike Fedak, Ari Friedlaender, Nick Gales, Mike Goebel, Kimberly T. Goetz, Christophe Guinet, Simon D. Goldsworthy, Rob Harcourt, Jefferson T. Hinke, Kerstin Jerosch, Akiko Kato, Knowles R. Kerry, Roger Kirkwood, Gerald L. Kooyman, Kit M. Kovacs, Kieran Lawton, Andrew D. Lowther, Christian Lydersen, Phil O’B. Lyver, Azwianewi B. Makhado, Maria E. I. Márquez, Birgitte I. McDonald, Clive R. McMahon, Monica Muelbert, Dominik Nachtsheim, Keith W. Nicholls, Erling S. Nordøy, Silvia Olmastroni, Richard A. Phillips, Pierre Pistorius, Joachim Plötz, Klemens Pütz, Norman Ratcliffe, Peter G. Ryan, Mercedes Santos, Colin Southwell, Iain Staniland, Akinori Takahashi, Arnaud Tarroux, Wayne Trivelpiece, Ewan Wakefield, Henri Weimerskirch, Barbara Wienecke, José C. Xavier, Ben Raymond, Mark A. Hindell, The retrospective analysis of Antarctic tracking data project, Scientific Data, 10.1038/s41597-020-0406-x, 7, 1, (2020).
- Christine M. Anderson, H. Grant Gilchrist, Robert A. Ronconi, Katherine R. Shlepr, Daniel E. Clark, David A. Fifield, Gregory J. Robertson, Mark L. Mallory, Both short and long distance migrants use energy-minimizing migration strategies in North American herring gulls, Movement Ecology, 10.1186/s40462-020-00207-9, 8, 1, (2020).
- LA Hückstädt, LK Schwarz, AS Friedlaender, BR Mate, AN Zerbini, A Kennedy, J Robbins, NJ Gales, DP Costa, A dynamic approach to estimate the probability of exposure of marine predators to oil exploration seismic surveys over continental shelf waters, Endangered Species Research, 10.3354/esr01048, 42, (185-199), (2020).
- D Stalder, FM van Beest, S Sveegaard, R Dietz, J Teilmann, J Nabe-Nielsen, Influence of environmental variability on harbour porpoise movement, Marine Ecology Progress Series, 10.3354/meps13412, 648, (207-219), (2020).
- Leena Riekkola, Virginia Andrews‐Goff, Ari Friedlaender, Alexandre N. Zerbini, Rochelle Constantine, Longer migration not necessarily the costliest strategy for migrating humpback whales, Aquatic Conservation: Marine and Freshwater Ecosystems, 10.1002/aqc.3295, 30, 5, (937-948), (2020).
- Christopher E. Latimer, Olivia M. Smith, Joseph M. Taylor, Amanda B. Edworthy, Jeb P. Owen, William E. Snyder, Christina M. Kennedy, Landscape context mediates the physiological stress response of birds to farmland diversification, Journal of Applied Ecology, 10.1111/1365-2664.13583, 57, 4, (671-680), (2020).
- Karolin Wagener, Matthias Bros, Matthias Krumb, Jens Langhanki, Stefanie Pektor, Matthias Worm, Meike Schinnerer, Evelyn Montermann, Matthias Miederer, Holger Frey, Till Opatz, Frank Rösch, Targeting of Immune Cells with Trimannosylated Liposomes, Advanced Therapeutics, 10.1002/adtp.201900185, 3, 6, (2020).
- Sachiko Watanabe, Fumitake Usui‐Kawanishi, Tadayoshi Karasawa, Hiroaki Kimura, Ryo Kamata, Takanori Komada, Yoshiyuki Inoue, Nathan Mise, Tadashi Kasahara, Masafumi Takahashi, Glucose regulates hypoxia‐induced NLRP3 inflammasome activation in macrophages, Journal of Cellular Physiology, 10.1002/jcp.29659, 235, 10, (7554-7566), (2020).
- Youngbin Do, Duk Young Jeong, Suhui Lee, Seongbok Kang, Seonhyang Jang, Jin Jang, Remarkable Improvement in Foldability of Poly‐Si Thin‐Film Transistor on Polyimide Substrate Using Blue Laser Crystallization of Amorphous Si and Comparison with Conventional Poly‐Si Thin‐Film Transistor Used for Foldable Displays, Advanced Engineering Materials, 10.1002/adem.201901430, 22, 5, (2020).
- Saeed Iqbal, Aadil Raza, Muhammad Fasih Uddin Butt, Salman Ghafoor, Mohammed El‐Hajjar, A full‐duplex radio over fiber architecture employing 12 Gbps 16 × 16 optical multiple input multiple output for next‐generation communication networks, Transactions on Emerging Telecommunications Technologies, 10.1002/ett.3910, 31, 8, (2020).
- Joana R. A. Loureiro, Amber Leaver, Megha Vasavada, Ashish K. Sahib, Antoni Kubicki, Shantanu Joshi, Roger P. Woods, Benjamin Wade, Eliza Congdon, Randall Espinoza, Katherine L. Narr, Modulation of amygdala reactivity following rapidly acting interventions for major depression, Human Brain Mapping, 10.1002/hbm.24895, 41, 7, (1699-1710), (2020).
- Mei Dong, Xiaopu Wang, Xiang‐Zhong Chen, Fajer Mushtaq, Siyu Deng, Caihong Zhu, Harun Torlakcik, Anastasia Terzopoulou, Xiao‐Hua Qin, Xuanzhong Xiao, Josep Puigmartí‐Luis, Hongsoo Choi, Ana Paula Pêgo, Qun‐Dong Shen, Bradley J. Nelson, Salvador Pané, 3D‐Printed Soft Magnetoelectric Microswimmers for Delivery and Differentiation of Neuron‐Like Cells, Advanced Functional Materials, 10.1002/adfm.201910323, 30, 17, (2020).
- Ian D. Jonsen, Toby A. Patterson, Daniel P. Costa, Philip D. Doherty, Brendan J. Godley, W. James Grecian, Christophe Guinet, Xavier Hoenner, Sarah S. Kienle, Patrick W. Robinson, Stephen C. Votier, Scott Whiting, Matthew J. Witt, Mark A. Hindell, Robert G. Harcourt, Clive R. McMahon, A continuous-time state-space model for rapid quality control of argos locations from animal-borne tags, Movement Ecology, 10.1186/s40462-020-00217-7, 8, 1, (2020).
- SME Fortune, SH Ferguson, AW Trites, B LeBlanc, V LeMay, JM Hudson, MF Baumgartner, Seasonal diving and foraging behaviour of Eastern Canada-West Greenland bowhead whales, Marine Ecology Progress Series, 10.3354/meps13356, 643, (197-217), (2020).
- Rune Dietz, Audun H. Rikardsen, Martin Biuw, Lars Kleivane, Christina Lehmkuhl Noer, Dominique Stalder, Floris M. van Beest, Frank F. Rigét, Christian Sonne, Martin Hansen, Hanne Strager, Morten Tange Olsen, Migratory and diurnal activity of North Atlantic killer whales (Orcinus orca) off northern Norway, Journal of Experimental Marine Biology and Ecology, 10.1016/j.jembe.2020.151456, 533, (151456), (2020).
- Gaius Wilson, Russell J. Gray, Hizir Sofyan, Identifying the variation in utilization density estimators and home ranges of elephant clans in Aceh, Sumatra, Indonesia, European Journal of Wildlife Research, 10.1007/s10344-020-01426-6, 66, 6, (2020).
- Henry R. Scharf, Frances E. Buderman, Animal movement models for multiple individuals, WIREs Computational Statistics , 10.1002/wics.1506, 12, 6, (2020).
- David Anderson, Robin W. Baird, Amanda L. Bradford, Erin M. Oleson, Is it all about the haul? Pelagic false killer whale interactions with longline fisheries in the central North Pacific, Fisheries Research, 10.1016/j.fishres.2020.105665, 230, (105665), (2020).
- Christian Lydersen, Jade Vacquié-Garcia, Mads Peter Heide-Jørgensen, Nils Øien, Christophe Guinet, Kit M. Kovacs, Autumn movements of fin whales (Balaenoptera physalus) from Svalbard, Norway, revealed by satellite tracking, Scientific Reports, 10.1038/s41598-020-73996-z, 10, 1, (2020).
- Kristen M. Hart, Margaret M. Lamont, Autumn R. Iverson, Brian J. Smith, The Importance of the Northeastern Gulf of Mexico to Foraging Loggerhead Sea Turtles, Frontiers in Marine Science, 10.3389/fmars.2020.00330, 7, (2020).
- Tasha L. Metz, Mandi Gordon, Marc Mokrech, George Guillen, Movements of Juvenile Green Turtles (Chelonia mydas) in the Nearshore Waters of the Northwestern Gulf of Mexico, Frontiers in Marine Science, 10.3389/fmars.2020.00647, 7, (2020).
- Sofia Ruiz-Suarez, Vianey Leos-Barajas, Ignacio Alvarez-Castro, Juan Manuel Morales, Using approximate Bayesian inference for a “steps and turns” continuous-time random walk observed at regular time intervals, PeerJ, 10.7717/peerj.8452, 8, (e8452), (2020).
- Kenji Konishi, Tatsuya Isoda, Takeharu Bando, Shingo Minamikawa, Lars Kleivane, Antarctic minke whales find ice gaps along the ice edge in foraging grounds of the Indo-Pacific sector (60° E and 140° E) of the Southern Ocean, Polar Biology, 10.1007/s00300-020-02638-x, (2020).
- Jessica M. Aschettino, Daniel T. Engelhaupt, Amy G. Engelhaupt, Andrew DiMatteo, Todd Pusser, Michael F. Richlen, Joel T. Bell, Satellite Telemetry Reveals Spatial Overlap Between Vessel High-Traffic Areas and Humpback Whales (Megaptera novaeangliae) Near the Mouth of the Chesapeake Bay, Frontiers in Marine Science, 10.3389/fmars.2020.00121, 7, (2020).
- Carlos Correia Ramos, Kinematics in Biology: Symbolic Dynamics Approach, Mathematics, 10.3390/math8030339, 8, 3, (339), (2020).
- Verena Peschko, Sabine Müller, Philipp Schwemmer, Moritz Mercker, Peter Lienau, Tanja Rosenberger, Janne Sundermeyer, Stefan Garthe, Wide dispersal of recently weaned grey seal pups in the Southern North Sea, ICES Journal of Marine Science, 10.1093/icesjms/fsaa045, (2020).
- Alice I. Mackay, Frédéric Bailleul, Emma L. Carroll, Virginia Andrews-Goff, C. Scott Baker, John Bannister, Laura Boren, Krisa Carlyon, David M. Donnelly, Michael Double, Simon D. Goldsworthy, Robert Harcourt, Dirk Holman, Andrew Lowther, Guido J. Parra, Simon J. Childerhouse, Satellite derived offshore migratory movements of southern right whales (Eubalaena australis) from Australian and New Zealand wintering grounds, PLOS ONE, 10.1371/journal.pone.0231577, 15, 5, (e0231577), (2020).
- Christian Gredzens, Donna J. Shaver, Satellite Tracking Can Inform Population-Level Dispersal to Foraging Grounds of Post-nesting Kemp’s Ridley Sea Turtles, Frontiers in Marine Science, 10.3389/fmars.2020.00559, 7, (2020).
- K.J. Lefort, C.J.D. Matthews, J.W. Higdon, S.D. Petersen, K.H. Westdal, C.J. Garroway, S.H. Ferguson, A review of Canadian Arctic killer whale ( Orcinus orca ) ecology , Canadian Journal of Zoology, 10.1139/cjz-2019-0207, (245-253), (2020).
- Juliet S Lamb, Peter W C Paton, Jason E Osenkowski, Shannon S Badzinski, Alicia M Berlin, Tim Bowman, Chris Dwyer, Luke J Fara, Scott G Gilliland, Kevin Kenow, Christine Lepage, Mark L Mallory, Glenn H Olsen, Matthew C Perry, Scott A Petrie, Jean-Pierre L Savard, Lucas Savoy, Michael Schummer, Caleb S Spiegel, Scott R McWilliams, Implanted satellite transmitters affect sea duck movement patterns at short and long timescales, The Condor, 10.1093/condor/duaa029, (2020).
- Philip D. Doherty, Annette Cameron Broderick, Brendan John Godley, K. A. Hart, Q. Phillips, A. Sanghera, Thomas B. Stringell, J. T. Walker, Peter Bradley Richardson, Spatial Ecology of Sub-Adult Green Turtles in Coastal Waters of the Turks and Caicos Islands: Implications for Conservation Management, Frontiers in Marine Science, 10.3389/fmars.2020.00690, 7, (2020).
- Luis A. Hückstädt, Andrea Piñones, Daniel M. Palacios, Birgitte I. McDonald, Michael S. Dinniman, Eileen E. Hofmann, Jennifer M. Burns, Daniel E. Crocker, Daniel P. Costa, Projected shifts in the foraging habitat of crabeater seals along the Antarctic Peninsula, Nature Climate Change, 10.1038/s41558-020-0745-9, (2020).
- Ryan K. Logan, Jeremy J. Vaudo, Lara L. Sousa, Mark Sampson, Bradley M. Wetherbee, Mahmood S. Shivji, Seasonal Movements and Habitat Use of Juvenile Smooth Hammerhead Sharks in the Western North Atlantic Ocean and Significance for Management, Frontiers in Marine Science, 10.3389/fmars.2020.566364, 7, (2020).
- Sarah M. E. Fortune, Brent G. Young, Steven H. Ferguson, Age- and sex-specific movement, behaviour and habitat-use patterns of bowhead whales (Balaena mysticetus) in the Eastern Canadian Arctic, Polar Biology, 10.1007/s00300-020-02739-7, (2020).
- Cory J. D. Matthews, Greg A. Breed, Bernard LeBlanc, Steven H. Ferguson, Killer whale presence drives bowhead whale selection for sea ice in Arctic seascapes of fear, Proceedings of the National Academy of Sciences, 10.1073/pnas.1911761117, (201911761), (2020).
- Rocío Joo, Matthew E. Boone, Thomas A. Clay, Samantha C. Patrick, Susana Clusella‐Trullas, Mathieu Basille, Navigating through the r packages for movement, Journal of Animal Ecology, 10.1111/1365-2656.13116, 89, 1, (248-267), (2019).
- M. Ranalli, A. Maruotti, Model‐based clustering for noisy longitudinal circular data, with application to animal movement, Environmetrics, 10.1002/env.2572, 31, 2, (2019).
- Sam L. Cox, Matthieu Authier, Florian Orgeret, Henri Weimerskirch, Christophe Guinet, High mortality rates in a juvenile free‐ranging marine predator and links to dive and forage ability, Ecology and Evolution, 10.1002/ece3.5905, 10, 1, (410-430), (2019).
- Brook T. Russell, Mark D. Risser, Richard L. Smith, Kenneth E. Kunkel, Investigating the association between late spring Gulf of Mexico sea surface temperatures and U.S. Gulf Coast precipitation extremes with focus on Hurricane Harvey, Environmetrics, 10.1002/env.2595, 31, 2, (2019).
- P. Tencaliec, A.‐C. Favre, P. Naveau, C. Prieur, G. Nicolet, Flexible semiparametric generalized Pareto modeling of the entire range of rainfall amount, Environmetrics, 10.1002/env.2582, 31, 2, (2019).
- Kristen M. Hart, Autumn R. Iverson, Allison M. Benscoter, Ikuko Fujisaki, Michael S. Cherkiss, Clayton Pollock, Ian Lundgren, Zandy Hillis-Starr, Satellite tracking of hawksbill turtles nesting at Buck Island Reef National Monument, US Virgin Islands: Inter-nesting and foraging period movements and migrations, Biological Conservation, 10.1016/j.biocon.2018.11.011, 229, (1-13), (2019).
- Daniel M. Palacios, Helen Bailey, Elizabeth A. Becker, Steven J. Bograd, Monica L. DeAngelis, Karin A. Forney, Elliott L. Hazen, Ladd M. Irvine, Bruce R. Mate, Ecological correlates of blue whale movement behavior and its predictability in the California Current Ecosystem during the summer-fall feeding season, Movement Ecology, 10.1186/s40462-019-0164-6, 7, 1, (2019).
- Kylie Owen, K. Curt S. Jenner, Micheline-Nicole M. Jenner, Robert D. McCauley, Russel D. Andrews, Water temperature correlates with baleen whale foraging behaviour at multiple scales in the Antarctic, Marine and Freshwater Research, 10.1071/MF17288, 70, 1, (19), (2019).
- Christoffer Moesgaard Albertsen, Generalizing the first-difference correlated random walk for marine animal movement data, Scientific Reports, 10.1038/s41598-019-40405-z, 9, 1, (2019).
- Diana E. LaScala-Gruenewald, Rohan S. Mehta, Yu Liu, Mark W. Denny, Sensory perception plays a larger role in foraging efficiency than heavy-tailed movement strategies, Ecological Modelling, 10.1016/j.ecolmodel.2019.02.015, (2019).
- Evert Mul, Marie-Anne Blanchet, Martin Biuw, Audun Rikardsen, Implications of tag positioning and performance on the analysis of cetacean movement, Animal Biotelemetry, 10.1186/s40317-019-0173-7, 7, 1, (2019).
- Xin Wang, Lei Cao, Anthony D. Fox, Richard Fuller, Larry Griffin, Carl Mitchell, Yunlin Zhao, Oun-Kyong Moon, David Cabot, Zhenggang Xu, Nyambayar Batbayar, Andrea Kölzsch, Henk P. van der Jeugd, Jesper Madsen, Liding Chen, Ran Nathan, Stochastic simulations reveal few green wave surfing populations among spring migrating herbivorous waterfowl, Nature Communications, 10.1038/s41467-019-09971-8, 10, 1, (2019).
- Leena Riekkola, Virginia Andrews-Goff, Ari Friedlaender, Rochelle Constantine, Alexandre N. Zerbini, Environmental drivers of humpback whale foraging behavior in the remote Southern Ocean, Journal of Experimental Marine Biology and Ecology, 10.1016/j.jembe.2019.05.008, 517, (1-12), (2019).
- Barbara A. Lagerquist, Daniel M. Palacios, Martha H. Winsor, Ladd M. Irvine, Thomas M. Follett, Bruce R. Mate, Feeding home ranges of Pacific Coast Feeding Group gray whales, The Journal of Wildlife Management, 10.1002/jwmg.21642, 83, 4, (925-937), (2019).
- EAP Santos, ACCD Silva, R Sforza, FLC Oliveira, MI Weber, JC Castilhos, M López-Mendilaharsu, MAAG Marcovaldi, RMA Ramos, A DiMatteo, Olive ridley inter-nesting and post-nesting movements along the Brazilian coast and Atlantic Ocean, Endangered Species Research, 10.3354/esr00985, 40, (149-162), (2019).
- Mia Wege, P. J. Nico de Bruyn, Mark A. Hindell, Mary-Anne Lea, Marthán N. Bester, Preferred, small-scale foraging areas of two Southern Ocean fur seal species are not determined by habitat characteristics, BMC Ecology, 10.1186/s12898-019-0252-x, 19, 1, (2019).
- Juliet S. Lamb, Peter W. C. Paton, Jason E. Osenkowski, Shannon S. Badzinski, Alicia M. Berlin, Tim Bowman, Chris Dwyer, Luke J. Fara, Scott G. Gilliland, Kevin Kenow, Christine Lepage, Mark L. Mallory, Glenn H. Olsen, Matthew C. Perry, Scott A. Petrie, Jean‐Pierre L. Savard, Lucas Savoy, Michael Schummer, Caleb S. Spiegel, Scott R. McWilliams, Spatially explicit network analysis reveals multi‐species annual cycle movement patterns of sea ducks, Ecological Applications, 10.1002/eap.1919, 29, 5, (2019).
- Aimee L. Hoover, Dong Liang, Joanna Alfaro‐Shigueto, Jeffrey C. Mangel, Peter I. Miller, Stephen J. Morreale, Helen Bailey, George L. Shillinger, Predicting residence time using a continuous‐time discrete‐space model of leatherback turtle satellite telemetry data, Ecosphere, 10.1002/ecs2.2644, 10, 3, (2019).
- Francesco Finazzi, Lucia Paci, Quantifying personal exposure to air pollution from smartphone‐based location data, Biometrics, 10.1111/biom.13100, 75, 4, (1356-1366), (2019).
- Shino Furusaka, Kahoko Tochigi, Koji Yamazaki, Tomoko Naganuma, Akino Inagaki, Shinsuke Koike, Estimating the seasonal energy balance in Asian black bears and associated factors, Ecosphere, 10.1002/ecs2.2891, 10, 10, (2019).
- RD Gryba, FK Wiese, BP Kelly, AL Von Duyke, RS Pickart, DA Stockwell, Inferring foraging locations and water masses preferred by spotted seals Phoca largha and bearded seals Erignathus barbatus, Marine Ecology Progress Series, 10.3354/meps13145, 631, (209-224), (2019).
- Tonya Zeppelin, Noel Pelland, Jeremy Sterling, Brian Brost, Sharon Melin, Devin Johnson, Mary-Anne Lea, Rolf Ream, Migratory strategies of juvenile northern fur seals (Callorhinus ursinus): bridging the gap between pups and adults, Scientific Reports, 10.1038/s41598-019-50230-z, 9, 1, (2019).
- Sophie Bestley, Virginia Andrews-Goff, Esmee van Wijk, Stephen R. Rintoul, Michael C. Double, Jason How, New insights into prime Southern Ocean forage grounds for thriving Western Australian humpback whales, Scientific Reports, 10.1038/s41598-019-50497-2, 9, 1, (2019).
- M. Esther Jiménez López, Daniel M. Palacios, Armando Jaramillo Legorreta, Jorge Urbán R., Bruce R. Mate, Fin whale movements in the Gulf of California, Mexico, from satellite telemetry, PLOS ONE, 10.1371/journal.pone.0209324, 14, 1, (e0209324), (2019).
- Laurentiu Rozylowicz, Florian P. Bodescu, Cristiana M. Ciocanea, Athanasios A. Gavrilidis, Steluta Manolache, Marius L. Matache, Iulia V. Miu, Ionut C. Moale, Andreea Nita, Viorel D. Popescu, Empirical analysis and modeling of Argos Doppler location errors in Romania, PeerJ, 10.7717/peerj.6362, 7, (e6362), (2019).
- Natalie E. Wildermann, Christopher R. Sasso, Lesley W. Stokes, Derke Snodgrass, Mariana M. P. B. Fuentes, Habitat Use and Behavior of Multiple Species of Marine Turtles at a Foraging Area in the Northeastern Gulf of Mexico, Frontiers in Marine Science, 10.3389/fmars.2019.00155, 6, (2019).
- Ethan Lawler, Kim Whoriskey, William H. Aeberhard, Chris Field, Joanna Mills Flemming, The Conditionally Autoregressive Hidden Markov Model (CarHMM): Inferring Behavioural States from Animal Tracking Data Exhibiting Conditional Autocorrelation, Journal of Agricultural, Biological and Environmental Statistics, 10.1007/s13253-019-00366-2, (2019).
- Pelayo Salinas-de-León, Denisse Fierro-Arcos, Jennifer Suarez-Moncada, Alberto Proaño, Jacob Guachisaca-Salinas, Diego Páez-Rosas, A matter of taste: Spatial and ontogenetic variations on the trophic ecology of the tiger shark at the Galapagos Marine Reserve, PLOS ONE, 10.1371/journal.pone.0222754, 14, 9, (e0222754), (2019).
- Emily Mettler, Chelsea E. Clyde-Brockway, Shaya Honarvar, Frank V. Paladino, Migratory corridor linking Atlantic green turtle, Chelonia mydas, nesting site on Bioko Island, Equatorial Guinea to Ghanaian foraging grounds, PLOS ONE, 10.1371/journal.pone.0213231, 14, 6, (e0213231), (2019).
- Rob Harcourt, Ana M. M. Sequeira, Xuelei Zhang, Fabien Roquet, Kosei Komatsu, Michelle Heupel, Clive McMahon, Fred Whoriskey, Mark Meekan, Gemma Carroll, Stephanie Brodie, Colin Simpfendorfer, Mark Hindell, Ian Jonsen, Daniel P. Costa, Barbara Block, Mônica Muelbert, Bill Woodward, Mike Weise, Kim Aarestrup, Martin Biuw, Lars Boehme, Steven J. Bograd, Dorian Cazau, Jean-Benoit Charrassin, Steven J. Cooke, Paul Cowley, P. J. Nico de Bruyn, Tiphaine Jeanniard du Dot, Carlos Duarte, Víctor M. Eguíluz, Luciana C. Ferreira, Juan Fernández-Gracia, Kimberly Goetz, Yusuke Goto, Christophe Guinet, Mike Hammill, Graeme C. Hays, Elliott L. Hazen, Luis A. Hückstädt, Charlie Huveneers, Sara Iverson, Saifullah Arifin Jaaman, Kongkiat Kittiwattanawong, Kit M. Kovacs, Christian Lydersen, Tim Moltmann, Masaru Naruoka, Lachlan Phillips, Baptiste Picard, Nuno Queiroz, Gilles Reverdin, Katsufumi Sato, David W. Sims, Eva B. Thorstad, Michele Thums, Anne M. Treasure, Andrew W. Trites, Guy D. Williams, Yoshinari Yonehara, Mike A. Fedak, Animal-Borne Telemetry: An Integral Component of the Ocean Observing Toolkit, Frontiers in Marine Science, 10.3389/fmars.2019.00326, 6, (2019).
- Nuno Queiroz, Nicolas E. Humphries, Ana Couto, Marisa Vedor, Ivo da Costa, Ana M. M. Sequeira, Gonzalo Mucientes, António M. Santos, Francisco J. Abascal, Debra L. Abercrombie, Katya Abrantes, David Acuña-Marrero, André S. Afonso, Pedro Afonso, Darrell Anders, Gonzalo Araujo, Randall Arauz, Pascal Bach, Adam Barnett, Diego Bernal, Michael L. Berumen, Sandra Bessudo Lion, Natalia P. A. Bezerra, Antonin V. Blaison, Barbara A. Block, Mark E. Bond, Ramón Bonfil, Russell W. Bradford, Camrin D. Braun, Edward J. Brooks, Annabelle Brooks, Judith Brown, Barry D. Bruce, Michael E. Byrne, Steven E. Campana, Aaron B. Carlisle, Demian D. Chapman, Taylor K. Chapple, John Chisholm, Christopher R. Clarke, Eric G. Clua, Jesse E. M. Cochran, Estelle C. Crochelet, Laurent Dagorn, Ryan Daly, Daniel Devia Cortés, Thomas K. Doyle, Michael Drew, Clinton A. J. Duffy, Thor Erikson, Eduardo Espinoza, Luciana C. Ferreira, Francesco Ferretti, John D. Filmalter, G. Chris Fischer, Richard Fitzpatrick, Jorge Fontes, Fabien Forget, Mark Fowler, Malcolm P. Francis, Austin J. Gallagher, Enrico Gennari, Simon D. Goldsworthy, Matthew J. Gollock, Jonathan R. Green, Johan A. Gustafson, Tristan L. Guttridge, Hector M. Guzman, Neil Hammerschlag, Luke Harman, Fábio H. V. Hazin, Matthew Heard, Alex R. Hearn, John C. Holdsworth, Bonnie J. Holmes, Lucy A. Howey, Mauricio Hoyos, Robert E. Hueter, Nigel E. Hussey, Charlie Huveneers, Dylan T. Irion, David M. P. Jacoby, Oliver J. D. Jewell, Ryan Johnson, Lance K. B. Jordan, Salvador J. Jorgensen, Warren Joyce, Clare A. Keating Daly, James T. Ketchum, A. Peter Klimley, Alison A. Kock, Pieter Koen, Felipe Ladino, Fernanda O. Lana, James S. E. Lea, Fiona Llewellyn, Warrick S. Lyon, Anna MacDonnell, Bruno C. L. Macena, Heather Marshall, Jaime D. McAllister, Rory McAuley, Michael A. Meÿer, John J. Morris, Emily R. Nelson, Yannis P. Papastamatiou, Toby A. Patterson, Cesar Peñaherrera-Palma, Julian G. Pepperell, Simon J. Pierce, Francois Poisson, Lina Maria Quintero, Andrew J. Richardson, Paul J. Rogers, Christoph A. Rohner, David R. L. Rowat, Melita Samoilys, Jayson M. Semmens, Marcus Sheaves, George Shillinger, Mahmood Shivji, Sarika Singh, Gregory B. Skomal, Malcolm J. Smale, Laurenne B. Snyders, German Soler, Marc Soria, Kilian M. Stehfest, John D. Stevens, Simon R. Thorrold, Mariana T. Tolotti, Alison Towner, Paulo Travassos, John P. Tyminski, Frederic Vandeperre, Jeremy J. Vaudo, Yuuki Y. Watanabe, Sam B. Weber, Bradley M. Wetherbee, Timothy D. White, Sean Williams, Patricia M. Zárate, Robert Harcourt, Graeme C. Hays, Mark G. Meekan, Michele Thums, Xabier Irigoien, Victor M. Eguiluz, Carlos M. Duarte, Lara L. Sousa, Samantha J. Simpson, Emily J. Southall, David W. Sims, Global spatial risk assessment of sharks under the footprint of fisheries, Nature, 10.1038/s41586-019-1444-4, (2019).
- Autumn R. Iverson, Ikuko Fujisaki, Margaret M. Lamont, Kristen M. Hart, Loggerhead sea turtle (Caretta caretta) diving changes with productivity, behavioral mode, and sea surface temperature, PLOS ONE, 10.1371/journal.pone.0220372, 14, 8, (e0220372), (2019).
- Hector M. Guzman, Grant Rogers, Catalina G. Gomez, Behavioral States Related to Environmental Conditions and Fisheries During Olive Ridley Turtle Migration From Pacific Panama, Frontiers in Marine Science, 10.3389/fmars.2019.00770, 6, (2019).
- Catherine G Haase, Robert J Fletcher, Daniel H Slone, James P Reid, Susan M Butler, Traveling to thermal refuges during stressful temperatures leads to foraging constraints in a central-place forager, Journal of Mammalogy, 10.1093/jmammal/gyz197, (2019).
- Francesco Finazzi, Lucia Paci, Kernel-based estimation of individual location densities from smartphone data, Statistical Modelling, 10.1177/1471082X17870331, (1471082X1787033), (2019).
- Karine Delord, Christophe Barbraud, David Pinaud, Bruno Letournel, Baptiste Jaugeon, Herlé Goraguer, Pascal Lazure, Hervé Lormée, Movements of three alcid species breeding sympatrically in Saint Pierre and Miquelon, northwestern Atlantic Ocean, Journal of Ornithology, 10.1007/s10336-019-01725-z, (2019).
- David W Sims, Nicolas E Humphries, Nan Hu, Violeta Medan, Jimena Berni, Optimal searching behaviour generated intrinsically by the central pattern generator for locomotion, eLife, 10.7554/eLife.50316, 8, (2019).
- Malcolm P. Francis, Mahmood S. Shivji, Clinton A. J. Duffy, Paul J. Rogers, Michael E. Byrne, Bradley M. Wetherbee, Scott C. Tindale, Warrick S. Lyon, Megan M. Meyers, Oceanic nomad or coastal resident? Behavioural switching in the shortfin mako shark (Isurus oxyrinchus), Marine Biology, 10.1007/s00227-018-3453-5, 166, 1, (2018).
- Théo Michelot, Paul G. Blackwell, Jason Matthiopoulos, Linking resource selection and step selection models for habitat preferences in animals, Ecology, 10.1002/ecy.2452, 100, 1, (2018).
- Gianluca Mastrantonio, The joint projected normal and skew-normal: A distribution for poly-cylindrical data, Journal of Multivariate Analysis, 10.1016/j.jmva.2017.11.006, 165, (14-26), (2018).
- Xincong Yang, Heng Li, Fenglai Wang, Xiaochun Luo, Dongping Cao, Using Switching State-Space Model to Identify Work States Based on Movement Data, Proceedings of the 21st International Symposium on Advancement of Construction Management and Real Estate, 10.1007/978-981-10-6190-5, (1547-1558), (2018).
- Katrina T. Aleksa, Christopher R. Sasso, Redwood W. Nero, Daniel R. Evans, Movements of leatherback turtles (Dermochelys coriacea) in the Gulf of Mexico, Marine Biology, 10.1007/s00227-018-3417-9, 165, 10, (2018).
- Justin W. Baldwin, Katie Leap, John T. Finn, Jennifer R. Smetzer, Bayesian state-space models reveal unobserved off-shore nocturnal migration from Motus data, Ecological Modelling, 10.1016/j.ecolmodel.2018.08.006, 386, (38-46), (2018).
- Robert A. Ronconi, Stefan Schoombie, Andrew J. Westgate, Sarah N. P. Wong, Heather N. Koopman, Peter G. Ryan, Effects of age, sex, colony and breeding phase on marine space use by Great Shearwaters Ardenna gravis in the South Atlantic, Marine Biology, 10.1007/s00227-018-3299-x, 165, 3, (2018).
- Gerald L. Kooyman, Robert P. van Dam, Luis A. Hückstädt, Night diving by some emperor penguins during the winter breeding period at Cape Washington, The Journal of Experimental Biology, 10.1242/jeb.170795, 221, 1, (jeb170795), (2018).
- Guiming Wang, Machine learning for inferring animal behavior from location and movement data, Ecological Informatics, 10.1016/j.ecoinf.2018.12.002, (2018).
- Robert Fletcher, Marie-Josée Fortin, Robert Fletcher, Marie-Josée Fortin, Space Use and Resource Selection, Spatial Ecology and Conservation Modeling, 10.1007/978-3-030-01989-1, (271-320), (2018).
- Leena Riekkola, Alexandre N. Zerbini, Olive Andrews, Virginia Andrews-Goff, C. Scott Baker, David Chandler, Simon Childerhouse, Phillip Clapham, Remi Dodémont, David Donnelly, Ari Friedlaender, Ramon Gallego, Claire Garrigue, Yulia Ivashchenko, Simon Jarman, Rebecca Lindsay, Logan Pallin, Jooke Robbins, Debbie Steel, James Tremlett, Silje Vindenes, Rochelle Constantine, Application of a multi-disciplinary approach to reveal population structure and Southern Ocean feeding grounds of humpback whales, Ecological Indicators, 10.1016/j.ecolind.2018.02.030, 89, (455-465), (2018).
- V. Andrews-Goff, S. Bestley, N. J. Gales, S. M. Laverick, D. Paton, A. M. Polanowski, N. T. Schmitt, M. C. Double, Humpback whale migrations to Antarctic summer foraging grounds through the southwest Pacific Ocean, Scientific Reports, 10.1038/s41598-018-30748-4, 8, 1, (2018).
- Gemma Carroll, Robert Harcourt, Benjamin J. Pitcher, David Slip, Ian Jonsen, Recent prey capture experience and dynamic habitat quality mediate short-term foraging site fidelity in a seabird, Proceedings of the Royal Society B: Biological Sciences, 10.1098/rspb.2018.0788, 285, 1883, (20180788), (2018).
- Enrico Pirotta, Marc Mangel, Daniel P. Costa, Bruce Mate, Jeremy A. Goldbogen, Daniel M. Palacios, Luis A. Hückstädt, Elizabeth A. McHuron, Lisa Schwarz, Leslie New, A Dynamic State Model of Migratory Behavior and Physiology to Assess the Consequences of Environmental Variation and Anthropogenic Disturbance on Marine Vertebrates, The American Naturalist, 10.1086/695135, 191, 2, (E40-E56), (2018).
- Brian D. Gerber, Mevin B. Hooten, Christopher P. Peck, Mindy B. Rice, James H. Gammonley, Anthony D. Apa, Amy J. Davis, Accounting for location uncertainty in azimuthal telemetry data improves ecological inference, Movement Ecology, 10.1186/s40462-018-0129-1, 6, 1, (2018).
- Autumn-Lynn Harrison, Daniel P. Costa, Arliss J. Winship, Scott R. Benson, Steven J. Bograd, Michelle Antolos, Aaron B. Carlisle, Heidi Dewar, Peter H. Dutton, Salvador J. Jorgensen, Suzanne Kohin, Bruce R. Mate, Patrick W. Robinson, Kurt M. Schaefer, Scott A. Shaffer, George L. Shillinger, Samantha E. Simmons, Kevin C. Weng, Kristina M. Gjerde, Barbara A. Block, The political biogeography of migratory marine predators, Nature Ecology & Evolution, 10.1038/s41559-018-0646-8, 2, 10, (1571-1578), (2018).
- Ben G. Weinstein, Ladd Irvine, Ari S. Friedlaender, Capturing foraging and resting behavior using nested multivariate Markov models in an air-breathing marine vertebrate, Movement Ecology, 10.1186/s40462-018-0134-4, 6, 1, (2018).
- Elliott L. Hazen, Kylie L. Scales, Sara M. Maxwell, Dana K. Briscoe, Heather Welch, Steven J. Bograd, Helen Bailey, Scott R. Benson, Tomo Eguchi, Heidi Dewar, Suzy Kohin, Daniel P. Costa, Larry B. Crowder, Rebecca L. Lewison, A dynamic ocean management tool to reduce bycatch and support sustainable fisheries, Science Advances, 10.1126/sciadv.aar3001, 4, 5, (eaar3001), (2018).
- M Thums, J Rossendell, M Guinea, LC Ferreira, Horizontal and vertical movement behaviour of flatback turtles and spatial overlap with industrial development, Marine Ecology Progress Series, 10.3354/meps12650, 602, (237-253), (2018).
- Camrin D. Braun, Benjamin Galuardi, Simon R. Thorrold, HMMoce: An R package for improved geolocation of archival‐tagged fishes using a hidden Markov method, Methods in Ecology and Evolution, 10.1111/2041-210X.12959, 9, 5, (1212-1220), (2018).
- Brett T. McClintock, Théo Michelot, momentuHMM: R package for generalized hidden Markov models of animal movement, Methods in Ecology and Evolution, 10.1111/2041-210X.12995, 9, 6, (1518-1530), (2018).
- Jonathan R. Potts, Luca Börger, D. Michael Scantlebury, Nigel C. Bennett, Abdulaziz Alagaili, Rory P. Wilson, Finding turning‐points in ultra‐high‐resolution animal movement data, Methods in Ecology and Evolution, 10.1111/2041-210X.13056, 9, 10, (2091-2101), (2018).
- Stacy L. Bierwagen, Michelle R. Heupel, Andrew Chin, Colin A. Simpfendorfer, Trophodynamics as a Tool for Understanding Coral Reef Ecosystems, Frontiers in Marine Science, 10.3389/fmars.2018.00024, 5, (2018).
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