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Volume 88, Issue 10
Concepts and Synthesis

PARTITIONING DIVERSITY INTO INDEPENDENT ALPHA AND BETA COMPONENTS

Lou Jost

Corresponding Author

E-mail address: loujost@yahoo.com

Baños, Tungurahua, Ecuador

E-mail: E-mail address: loujost@yahoo.comSearch for more papers by this author
First published: 01 October 2007
Citations: 854

Abstract

Existing general definitions of beta diversity often produce a beta with a hidden dependence on alpha. Such a beta cannot be used to compare regions that differ in alpha diversity. To avoid misinterpretation, existing definitions of alpha and beta must be replaced by a definition that partitions diversity into independent alpha and beta components. Such a unique definition is derived here. When these new alpha and beta components are transformed into their numbers equivalents (effective numbers of elements), Whittaker's multiplicative law (alpha × beta = gamma) is necessarily true for all indices. The new beta gives the effective number of distinct communities. The most popular similarity and overlap measures of ecology (Jaccard, Sorensen, Horn, and Morisita‐Horn indices) are monotonic transformations of the new beta diversity. Shannon measures follow deductively from this formalism and do not need to be borrowed from information theory; they are shown to be the only standard diversity measures which can be decomposed into meaningful independent alpha and beta components when community weights are unequal.

Number of times cited according to CrossRef: 854

  • Forest Ecosystem Services and Biodiversity, Spatial Modeling in Forest Resources Management, 10.1007/978-3-030-56542-8_22, (529-552), (2021).
  • Oropharyngeal microbiome of a college population following a meningococcal disease outbreak, Scientific Reports, 10.1038/s41598-020-57450-8, 10, 1, (2020).
  • Nestedness and turnover unveil inverse spatial patterns of compositional and functional β‐diversity at varying depth in marine benthos, Diversity and Distributions, 10.1111/ddi.13025, 26, 6, (743-757), (2020).
  • Defining Individual-Level Genetic Diversity and Similarity Profiles, Scientific Reports, 10.1038/s41598-020-62362-8, 10, 1, (2020).
  • Weed diversity is driven by complex interplay between multi-scale dispersal and local filtering, Proceedings of the Royal Society B: Biological Sciences, 10.1098/rspb.2020.1118, 287, 1930, (20201118), (2020).
  • Long-term impacts of increased timber harvests on ecosystem services and biodiversity: A scenario study based on national forest inventory data, Ecosystem Services, 10.1016/j.ecoser.2020.101150, 45, (101150), (2020).
  • Unravelling patterns of taxonomic and functional diversity of Amazon stream fish, Aquatic Sciences, 10.1007/s00027-020-00749-5, 82, 4, (2020).
  • A late Neanderthal tooth from northeastern Italy, Journal of Human Evolution, 10.1016/j.jhevol.2020.102867, 147, (102867), (2020).
  • Increased fish diversity over day and night in structurally complex habitats of artificial reefs, Journal of Experimental Marine Biology and Ecology, 10.1016/j.jembe.2019.151244, 522, (151244), (2020).
  • Urbanization increases biotic homogenization of zooplankton communities in tropical reservoirs, Ecological Indicators, 10.1016/j.ecolind.2019.105899, 110, (105899), (2020).
  • Defining a termite sampling protocol for ecological studies: An effective method to increase statistical power, European Journal of Soil Biology, 10.1016/j.ejsobi.2019.103145, 96, (103145), (2020).
  • Mediterranean marine protected areas have higher biodiversity via increased evenness, not abundance, Journal of Applied Ecology, 10.1111/1365-2664.13549, 57, 3, (578-589), (2020).
  • Temporal dynamics of stream fish assemblages and the role of spatial scale in quantifying change, Ecology and Evolution, 10.1002/ece3.5954, 10, 2, (952-961), (2020).
  • Functional unsupervised classification of spatial biodiversity, Ecological Indicators, 10.1016/j.ecolind.2019.106027, 111, (106027), (2020).
  • The origin of urban communities: From the regional species pool to community assemblages in city, Journal of Biogeography, 10.1111/jbi.13772, 47, 3, (615-629), (2020).
  • Effect of complexing agents on phosphorus release from chemical-enhanced phosphorus removal sludge during anaerobic fermentation, Bioresource Technology, 10.1016/j.biortech.2020.122745, (122745), (2020).
  • Specialized aquatic subterranean communities are probably most species-rich in the thickest epikarst, Limnologica, 10.1016/j.limno.2020.125756, (125756), (2020).
  • Loss of dominant caterpillar genera in a protected tropical forest, Scientific Reports, 10.1038/s41598-019-57226-9, 10, 1, (2020).
  • High spatial turnover in springtails of the Cape Floristic Region, Journal of Biogeography, 10.1111/jbi.13801, 47, 5, (1007-1018), (2020).
  • Marine latitudinal diversity gradients, niche conservatism and out of the tropics and Arctic: Climatic sensitivity of small organisms, Journal of Biogeography, 10.1111/jbi.13793, 47, 4, (817-828), (2020).
  • Backdating systematic shell ornament making in Europe to 45,000 years ago, Archaeological and Anthropological Sciences, 10.1007/s12520-019-00985-3, 12, 2, (2020).
  • Tree communities and soil properties influence fungal community assembly in neotropical forests, Biotropica, 10.1111/btp.12747, 52, 3, (444-456), (2020).
  • Formerly managed forest reserves complement integrative management for biodiversity conservation in temperate European forests, Biological Conservation, 10.1016/j.biocon.2020.108437, 242, (108437), (2020).
  • Soil microbial diversity drops with land‐use change in a high mountain temperate forest: a metagenomics survey, Environmental Microbiology Reports, 10.1111/1758-2229.12822, 12, 2, (185-194), (2020).
  • Response of the human gut and saliva microbiome to urbanization in Cameroon, Scientific Reports, 10.1038/s41598-020-59849-9, 10, 1, (2020).
  • Environmental drivers of taxonomic and functional diversity of ant communities in a tropical mountain, Insect Conservation and Diversity, 10.1111/icad.12415, 13, 4, (393-403), (2020).
  • Forest habitat parameters influence abundance and diversity of cadaver-visiting dung beetles in Central Europe, Royal Society Open Science, 10.1098/rsos.191722, 7, 3, (191722), (2020).
  • Analyzing snapshot diversity patterns with the Neutral Theory can show functional groups’ effects on community assembly, Ecology, 10.1002/ecy.2977, 101, 4, (2020).
  • Representativeness of national parks in protecting freshwater biodiversity: A case of Brazilian savanna, Ecology of Freshwater Fish, 10.1111/eff.12547, 29, 4, (705-721), (2020).
  • Tropical and Subtropical South America: A Study of Community Turnover Across Environmental Gradients, Neotropical Diversification: Patterns and Processes, 10.1007/978-3-030-31167-4_4, (71-83), (2020).
  • Decrease in ‐diversity, but not in ‐diversity, of ants in intensively managed coffee plantations, Insect Conservation and Diversity, 10.1111/icad.12417, 13, 5, (445-455), (2020).
  • Improved β‐diversity estimators based on multiple‐site dissimilarity: Distinguishing the sample from the population, Global Ecology and Biogeography, 10.1111/geb.13080, 29, 6, (1073-1084), (2020).
  • Impact of Seriphium plumosum densification on Mesic Highveld Grassland biodiversity in South Africa , Royal Society Open Science, 10.1098/rsos.192025, 7, 4, (192025), (2020).
  • Pesticides and land cover heterogeneity affect functional group and taxonomic diversity of arthropods in rice agroecosystems, Agriculture, Ecosystems & Environment, 10.1016/j.agee.2020.106927, 297, (106927), (2020).
  • Partial enteral nutrition has no benefit on bone health but improves growth in paediatric patients with quiescent or mild Crohn's disease, Clinical Nutrition, 10.1016/j.clnu.2020.04.012, (2020).
  • Different impacts of moderate human land use on the plant biodiversity of the characteristic Pannonian habitat complexes, Flora, 10.1016/j.flora.2020.151591, (151591), (2020).
  • Genetic diversity within and across gametophytic ploidy levels in a Sphagnum cryptic species complex, Australian Journal of Botany, 10.1071/BT19143, 68, 1, (49), (2020).
  • Conservation and herding co-benefit from traditional extensive wetland grazing, Agriculture, Ecosystems & Environment, 10.1016/j.agee.2020.106983, 300, (106983), (2020).
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  • Remote Sensing of Geodiversity as a Link to Biodiversity, Remote Sensing of Plant Biodiversity, 10.1007/978-3-030-33157-3, (225-253), (2020).
  • Applying Remote Sensing to Biodiversity Science, Remote Sensing of Plant Biodiversity, 10.1007/978-3-030-33157-3, (13-42), (2020).
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  • The definition and measurement of heterogeneity, Translational Psychiatry, 10.1038/s41398-020-00986-0, 10, 1, (2020).
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  • Hill-based dissimilarity indices and null models for analysis of microbial community assembly, Microbiome, 10.1186/s40168-020-00909-7, 8, 1, (2020).
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